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RNA Profiling
Sequence name:
Sampling Program:
Upload Sample
ViennaRNA
RNAstructure
Output style:
Decision Tree
Hasse Diagram
Feature type:
Stem Classes
Selected Helix Classes
Sample size:
Sampling seed:
Sample file:
File type:
Dot
Concatenated CT
Enter RNA sequence:
CAAAAGCACCAGGGGUGCUUGAACCAGGAUAGCCUGCGAAAAGGCGGGCUAUCCGGGACCAGGCUGAGAAAGUCCCUUUGAACCUGAACAGGGUAAUGCCUGCGCAGGGAGUGUGCAGUUUUUUUUUU
Advanced Options
Consistent helix class indexing:
Frequency format:
Counts
Percentage
Decimal
Minimum contingency node proportion:
Featured helix class counts cutoff:
Featured profile counts cutoff:
Maximum stem gap size:
Stem count type:
Fuzzy Counts
Exact Counts
Region margin for fuzzy counts:
Base-pair count margin for fuzzy counts:
Please select a sample for upload or select a sampling program
Please input a sequence
Loading result. Please do not press submit button multiple times. Loading may take up to 30 seconds for sequences of 600 nts with samples of size 10,000. It should be shorter for shorter sequences or smaller samples.
What is
profiling
?
Frequently Asked Questions
Report any issues with the website
here
Version 2.0
Cite
here
Download the code
here
Example output
Version 1.0
Cite
here
Download the code
here