S.lycopersicum.1

0 [E][A[A]][F][13][B] 110 [168] I 1 [E][A[A[A]]][F][B] 83 [651] II 1->0 13 2 [E][A[A]][F][17][B] 81 [161] III 1->2 17 3 [14[E][A[A]][F]][B] 33 [183] 1->3 14 6 [E][A[A]][F][C][B] 173 [275] V 1->6 C 10 [14[E][A[A]][F]][17][B] 46 [61] VII 2->10 14 3->10 17 9 [14[E][A[A]][F]][C][B] 66 [81] VI 3->9 C 6->9 14 4 [B] 0 [1000] 4->1 A,F,E 7 [13][B] 0 [298] 4->7 13 7->0 A,E,F 5 [D[12]][13][B] 42 [82] IV 7->5 D,12 8 [] 0 [1000] 8->4 B
FeatureRegionFrequencyHelix Classes
B135, 145; 150, 15910001, 2
A48, 64; 73, 908123, 4, 6
E16, 27; 38, 487385, 8
F91, 99; 105, 1147107, 9
C116, 120; 126, 13038510, 11
13115, 117; 126, 12829813
1235, 40; 44, 4925912
17119, 120; 129, 13025217
D3, 10; 104, 11221515, 16
1410, 14; 111, 11521214
Helix Classmax (i, j, k)Exact Freq
1(142, 153, 4)1000
2(135, 159, 6)996
3(54, 84, 4)790
4(48, 90, 5)771
5(20, 45, 8)735
6(59, 78, 6)719
7(94, 110, 6)709
8(16, 48, 5)585
9(91, 114, 4)432
10(119, 127, 2)326
11(116, 130, 2)315
12(35, 49, 6)255
13(115, 128, 3)244
14(10, 115, 5)212
15(7, 107, 4)210
16(3, 112, 5)207
17(119, 130, 2)206

sample_format=dot sample_count=1000 output_style=hasse feature_type=stem_classes disable_fuzzy_stem_counts=False consistent_helix_indexing=False frequency_format=counts sequence_file sample_file

AUACUUACCUGGACGGGGUCUAUGGGCGAUCAUGUAGGUCCAUGGCCUAGGUUGGUGACUUUCAUUGCACUUUGGAGGGGUGCCCGCCUAAGAUCAGCCCAAGAGGUUGAGUCUACAUCAUAAUUUGUUGCUGAGGGGGCAUGCGUUCGCGCAGCCCCUGC